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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29630.m000796 | ||||||||
Common Name | LOC8285042, RCOM_0524660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 577aa MW: 64315 Da PI: 6.4279 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9.1e-05 | 85 | 106 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F + +L+ H+r H 29630.m000796 85 ECRVCGKQFESARSLHGHMRHH 106 6*******************99 PP | |||||||
2 | zf-C2H2 | 18.3 | 6.3e-06 | 115 | 136 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F++ +L+ H+r+H 29630.m000796 115 RCKECGKGFKTVRSLTGHMRLH 136 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.03E-6 | 6 | 36 | No hit | No description |
Pfam | PF13912 | 4.2E-7 | 9 | 34 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.367 | 10 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 12 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.697 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.024 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.4E-4 | 85 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.74E-10 | 85 | 136 | No hit | No description |
Pfam | PF13912 | 2.9E-4 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.988 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0012 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.4E-4 | 115 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-5 | 116 | 137 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.65E-8 | 408 | 431 | No hit | No description |
Pfam | PF13912 | 0.0018 | 409 | 432 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.596 | 409 | 436 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.41 | 409 | 431 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 411 | 431 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.65E-8 | 489 | 516 | No hit | No description |
PROSITE profile | PS50157 | 9.972 | 494 | 521 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-11 | 494 | 518 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 494 | 516 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 496 | 516 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MEEDRKKKRH VCKLCNKSFL SGRILGGHMR THRSRNSVEE DVILENSNMG DEGCYGLREN 60 PKKSWKSSFL NDNDDSLLSV QESVECRVCG KQFESARSLH GHMRHHSVEE RNGVRCKECG 120 KGFKTVRSLT GHMRLHSLKN RVSNESRTSP GPNLVVIALP NAKTVNLVRR KRSNRTRCKV 180 TSPNSSFSSL NESVSGFEIE HEVEEVALCL MMLSRGVYES GEFKSVGESM NTDSLSFEAK 240 PLDESKQMGS SDGEIDVFDG DELVKKKKQR VEKFDSCASD SKNKTSEGSD CDRDMACTEE 300 EKIQLESSTV NSYQPADSKR PEVGDECDWQ LCDTEVEKVI HVEMDSSATE SHSSQETREK 360 VGLDLASLEH VIYTPSKKAV FDAEMGKDSC TEIICSTANF DDSKKKNQFQ CRICSKMFLT 420 HQALGGHQTL HRTSKSSAAL KIDNCQEGIQ TNSFPEKSDA RSEAGKLDSI KNSVEQEEDG 480 MTTTGYQLKK SKEHKCPICS KLFVSGQALG GHKRAHPAKA KEEQNMAMQQ EVPGICEALD 540 INLPAMIDTE SNDEAGFKSC WTGTIYKHEP LLDVIAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002526088.1 | 0.0 | PREDICTED: zinc finger protein 600 | ||||
TrEMBL | B9SJB9 | 0.0 | B9SJB9_RICCO; Zinc finger protein, putative |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13359 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 3e-19 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 29630.m000796 |
Entrez Gene | 8285042 |