PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29630.m000796
Common NameLOC8285042, RCOM_0524660
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 577aa    MW: 64315 Da    PI: 6.4279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29630.m000796genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-0585106223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  Cgk F +  +L+ H+r H
  29630.m000796  85 ECRVCGKQFESARSLHGHMRHH 106
                    6*******************99 PP
2zf-C2H218.36.3e-06115136223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C+ Cgk F++  +L+ H+r+H
  29630.m000796 115 RCKECGKGFKTVRSLTGHMRLH 136
                    7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-6636No hitNo description
PfamPF139124.2E-7934IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3671037IPR007087Zinc finger, C2H2
SMARTSM003550.231032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.69784111IPR007087Zinc finger, C2H2
SMARTSM003550.02484106IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-485109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.74E-1085136No hitNo description
PfamPF139122.9E-485107IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.988114141IPR007087Zinc finger, C2H2
SMARTSM003550.0012114136IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-4115136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-5116137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-8408431No hitNo description
PfamPF139120.0018409432IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596409436IPR007087Zinc finger, C2H2
SMARTSM003550.41409431IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280411431IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-8489516No hitNo description
PROSITE profilePS501579.972494521IPR007087Zinc finger, C2H2
PfamPF139126.0E-11494518IPR007087Zinc finger, C2H2
SMARTSM003550.24494516IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280496516IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MEEDRKKKRH VCKLCNKSFL SGRILGGHMR THRSRNSVEE DVILENSNMG DEGCYGLREN  60
PKKSWKSSFL NDNDDSLLSV QESVECRVCG KQFESARSLH GHMRHHSVEE RNGVRCKECG  120
KGFKTVRSLT GHMRLHSLKN RVSNESRTSP GPNLVVIALP NAKTVNLVRR KRSNRTRCKV  180
TSPNSSFSSL NESVSGFEIE HEVEEVALCL MMLSRGVYES GEFKSVGESM NTDSLSFEAK  240
PLDESKQMGS SDGEIDVFDG DELVKKKKQR VEKFDSCASD SKNKTSEGSD CDRDMACTEE  300
EKIQLESSTV NSYQPADSKR PEVGDECDWQ LCDTEVEKVI HVEMDSSATE SHSSQETREK  360
VGLDLASLEH VIYTPSKKAV FDAEMGKDSC TEIICSTANF DDSKKKNQFQ CRICSKMFLT  420
HQALGGHQTL HRTSKSSAAL KIDNCQEGIQ TNSFPEKSDA RSEAGKLDSI KNSVEQEEDG  480
MTTTGYQLKK SKEHKCPICS KLFVSGQALG GHKRAHPAKA KEEQNMAMQQ EVPGICEALD  540
INLPAMIDTE SNDEAGFKSC WTGTIYKHEP LLDVIAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526088.10.0PREDICTED: zinc finger protein 600
TrEMBLB9SJB90.0B9SJB9_RICCO; Zinc finger protein, putative
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-19C2H2-like zinc finger protein